4PH8 Crystal structure of AggA, the major subunit of aggregative adherence fimbriae type I (AAF/I) from the Escherichia coli O4H104 date
authors Pakharukova, N.A., Tuitilla, M., Zavialov, A.V.
compound source
symmetry
R_factor
R_Free 0.2319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand GOL enzyme
Gene EUAG
Primary referenceStructural Insight into Host Recognition by Aggregative Adherence Fimbriae of Enteroaggregative Escherichia coli., Berry AA, Yang Y, Pakharukova N, Garnett JA, Lee WC, Cota E, Marchant J, Roy S, Tuittila M, Liu B, Inman KG, Ruiz-Perez F, Mandomando I, Nataro JP, Zavialov AV, Matthews S, PLoS Pathog. 2014 Sep 18;10(9):e1004404. doi: 10.1371/journal.ppat.1004404., eCollection 2014 Sep. PMID:25232738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4ph8.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4ph8.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4PH8
  • CSU: Contacts of Structural Units for 4PH8
  • Structure Factors (733 Kb)
  • Retrieve 4PH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PH8 from S2C, [Save to disk]
  • Re-refined 4ph8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PH8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PH8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ph8_A] [4ph8] [4ph8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PH8
  • Community annotation for 4PH8 at PDBWiki (http://pdbwiki.org)

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