4PHU Fatty Acid Binding Protein Hydrolase date May 07, 2014
title Crystal Structure Of Human Gpr40 Bound To Allosteric Agonist
authors A.Srivastava, J.K.Yano, Y.Hirozane, G.Kefala, G.Snell, W.Lane, F.G A.Ivetac, K.Aertgeerts, J.Nguyen, A.Jennings, K.Okada
compound source
Molecule: Free Fatty Acid Receptor 1,Lysozyme
Chain: A
Fragment: Unp O14842 Residues 2-213, Unp P00720 Residues 2- O14842 Residues 214-300;
Synonym: G-Protein Coupled Receptor 40,Endolysin,Lysis Prot Muramidase;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Other_details: Chimera
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Ffar1, Gpr40, E
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Pfastbac1
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.000 61.740 105.700 90.00 108.90 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand 1PE, 2YB, DMS, OLC enzyme Hydrolase E.C.3.2.1.17 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution structure of the human GPR40 receptor bound to allosteric agonist TAK-875., Srivastava A, Yano J, Hirozane Y, Kefala G, Gruswitz F, Snell G, Lane W, Ivetac A, Aertgeerts K, Nguyen J, Jennings A, Okada K, Nature. 2014 Jul 20. doi: 10.1038/nature13494. PMID:25043059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (4phu.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4PHU
  • CSU: Contacts of Structural Units for 4PHU
  • Structure Factors (484 Kb)
  • Retrieve 4PHU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PHU from S2C, [Save to disk]
  • Re-refined 4phu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PHU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PHU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PHU, from MSDmotif at EBI
  • Fold representative 4phu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4phu_A] [4phu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PHU
  • Community annotation for 4PHU at PDBWiki (http://pdbwiki.org)

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