4PI0 Oxidoreductase date May 07, 2014
title Crystal Structure Of Particulate Methane Monooxygenase From Methylocystis Sp. Atcc 49242 (Rockwell) Soaked In Copper
authors S.Sirajuddin, A.C.Rosenzweig
compound source
Molecule: Unknown Peptide
Chain: D, H, N
Organism_scientific: Methylocystis Sp. Atcc 49242
Organism_taxid: 622637

Molecule: Particulate Methane Monooxygenase Subunit A
Chain: F, J, B
Synonym: Pmoa
Ec: 1.14.18.3

Organism_scientific: Methylocystis Sp. Atcc 49242
Organism_taxid: 622637

Molecule: Particulate Methane Monooxygenase Subunit C
Chain: K, C, G
Synonym: Pmoc
Ec: 1.14.18.3

Organism_scientific: Methylocystis Sp. Atcc 49242
Organism_taxid: 622637

Molecule: Particulate Methane Monooxygenase Subunit B
Chain: E, A, I
Synonym: Pmob
Ec: 1.14.18.3

Organism_scientific: Methylocystis Sp. Atcc 49242
Organism_taxid: 622637
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.361 184.739 188.637 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand CU enzyme Oxidoreductase E.C.1.14.18.3 BRENDA
Primary referenceEffects of Zinc on Particulate Methane Monooxygenase Activity and Structure., Sirajuddin S, Barupala D, Helling S, Marcus K, Stemmler TL, Rosenzweig AC, J Biol Chem. 2014 Jun 18. pii: jbc.M114.581363. PMID:24942740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk]
  • Biological Unit Coordinates (4pi0.pdb1.gz) 420 Kb
  • LPC: Ligand-Protein Contacts for 4PI0
  • CSU: Contacts of Structural Units for 4PI0
  • Structure Factors (1241 Kb)
  • Retrieve 4PI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PI0 from S2C, [Save to disk]
  • Re-refined 4pi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PI0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PI0, from MSDmotif at EBI
  • Fold representative 4pi0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pi0_F] [4pi0_E] [4pi0_G] [4pi0_H] [4pi0_I] [4pi0_N] [4pi0_C] [4pi0_B] [4pi0_K] [4pi0_D] [4pi0_A] [4pi0] [4pi0_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PI0
  • Community annotation for 4PI0 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science