4PI2 Crystal structure of particulate methane monooxygenase from Methylocystis sp. ATCC 49242 (Rockwell) soaked in zinc date
authors Sirajuddin, S., Rosenzweig, A.C.
compound source
symmetry
R_factor
R_Free 0.2824
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.33
ligand CAC, CU, ZN enzyme
Primary referenceEffects of Zinc on Particulate Methane Monooxygenase Activity and Structure., Sirajuddin S, Barupala D, Helling S, Marcus K, Stemmler TL, Rosenzweig AC, J Biol Chem. 2014 Jun 18. pii: jbc.M114.581363. PMID:24942740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (427 Kb) [Save to disk]
  • Biological Unit Coordinates (4pi2.pdb1.gz) 419 Kb
  • LPC: Ligand-Protein Contacts for 4PI2
  • CSU: Contacts of Structural Units for 4PI2
  • Structure Factors (1108 Kb)
  • Retrieve 4PI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PI2 from S2C, [Save to disk]
  • Re-refined 4pi2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PI2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PI2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pi2_E] [4pi2_B] [4pi2_C] [4pi2_N] [4pi2_F] [4pi2_I] [4pi2_D] [4pi2_A] [4pi2_H] [4pi2_J] [4pi2_G] [4pi2_K] [4pi2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PI2
  • Community annotation for 4PI2 at PDBWiki (http://pdbwiki.org)

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