4PI9 Hydrolase date May 08, 2014
title Crystal Structure Of S. Aureus Autolysin E In Complex With M Nam-L-Ala-D-Iglu
authors M.Mihelic, M.Renko, D.Turk
compound source
Molecule: Autolysin E
Chain: A
Fragment: Unp Residues 35-258
Engineered: Yes
Organism_scientific: Staphylococcus Aureus (Strain Mu50 A 700699);
Organism_taxid: 158878
Strain: Mu50 Atcc 700699
Gene: Sav2307
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.209
length a length b length c angle alpha angle beta angle gamma
45.626 69.312 73.424 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand 3LT, CL, SO4 enzyme

Primary referenceThe mechanism behind the selection of two different cleavage sites in NAG-NAM polymers., Mihelic M, Vlahovicek-Kahlina K, Renko M, Mesnage S, Dobersek A, Taler-Vercic A, Jakas A, Turk D, IUCrJ. 2017 Feb 23;4(Pt 2):185-198. doi: 10.1107/S2052252517000367. eCollection, 2017 Mar 1. PMID:28250957
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (4pi9.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4PI9
  • CSU: Contacts of Structural Units for 4PI9
  • Structure Factors (599 Kb)
  • Retrieve 4PI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PI9 from S2C, [Save to disk]
  • Re-refined 4pi9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PI9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4pi9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pi9] [4pi9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PI9: [LYZ2 ] by SMART
  • Other resources with information on 4PI9
  • Community annotation for 4PI9 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science