4PIB Unknown Function date May 08, 2014
title Crystal Structure Of Uncharacterized Conserved Protein Pixa Burkholderia Thailandensis
authors Y.Kim, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Structur Genomics (Mcsg)
compound source
Molecule: Inclusion Body Protein
Chain: A, B, C, D, E, F, G, H, I, J
Engineered: Yes
Organism_scientific: Burkholderia Thailandensis
Organism_taxid: 271848
Strain: E264
Gene: Bth_i2413
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg68
symmetry Space Group: P 21 21 2
R_factor 0.181 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.806 84.868 249.693 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, CL, EDO, GOL, MSE enzyme
Gene BTH
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (610 Kb) [Save to disk]
  • Biological Unit Coordinates (4pib.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (4pib.pdb2.gz) 127 Kb
  • Biological Unit Coordinates (4pib.pdb3.gz) 122 Kb
  • Biological Unit Coordinates (4pib.pdb4.gz) 123 Kb
  • Biological Unit Coordinates (4pib.pdb5.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 4PIB
  • CSU: Contacts of Structural Units for 4PIB
  • Structure Factors (826 Kb)
  • Retrieve 4PIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PIB from S2C, [Save to disk]
  • Re-refined 4pib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PIB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PIB, from MSDmotif at EBI
  • Fold representative 4pib from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pib_B] [4pib] [4pib_J] [4pib_C] [4pib_H] [4pib_E] [4pib_F] [4pib_D] [4pib_G] [4pib_A] [4pib_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PIB
  • Community annotation for 4PIB at PDBWiki (http://pdbwiki.org)

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