OCA Atlas for 4PJI

4PJI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

30W, GOL, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, B		cellular response to iron io...

Primary reference

A molecular basis underpinning the T cell receptor heterogeneity of mucosal-associated invariant T cells., Eckle SB, Birkinshaw RW, Kostenko L, Corbett AJ, McWilliam HE, Reantragoon R, Chen Z, Gherardin NA, Beddoe T, Liu L, Patel O, Meehan B, Fairlie DP, Villadangos JA, Godfrey DI, Kjer-Nielsen L, McCluskey J, Rossjohn J, J Exp Med. 2014 Jul 28;211(8):1585-600. doi: 10.1084/jem.20140484. Epub 2014 Jul , 21. PMID:25049336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]

Biological Unit Coordinates (4pji.pdb1.gz) 264 Kb

Biological Unit Coordinates (4pji.pdb2.gz) 261 Kb

LPC: Ligand-Protein Contacts for 4PJI

CSU: Contacts of Structural Units for 4PJI

Structure Factors (1885 Kb)

Retrieve 4PJI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4PJI from S2C, [Save to disk]

Re-refined 4pji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PJI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pji] [4pji_A] [4pji_B] [4pji_C] [4pji_D] [4pji_E] [4pji_F] [4pji_G] [4pji_H]

SWISS-PROT database:

Domains found in 4PJI: [IG_like] [IGc1] [IGv ] by SMART

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