4PJI Structure of human MR1-Ac-6-FP in complex with human MAIT C-C10 TCR date
authors Birkinshaw, R.W., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 30W, GOL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B
  • cellular response to iron io...

    • Primary referenceA molecular basis underpinning the T cell receptor heterogeneity of mucosal-associated invariant T cells., Eckle SB, Birkinshaw RW, Kostenko L, Corbett AJ, McWilliam HE, Reantragoon R, Chen Z, Gherardin NA, Beddoe T, Liu L, Patel O, Meehan B, Fairlie DP, Villadangos JA, Godfrey DI, Kjer-Nielsen L, McCluskey J, Rossjohn J, J Exp Med. 2014 Jul 28;211(8):1585-600. doi: 10.1084/jem.20140484. Epub 2014 Jul , 21. PMID:25049336
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • Biological Unit Coordinates (4pji.pdb1.gz) 264 Kb
  • Biological Unit Coordinates (4pji.pdb2.gz) 261 Kb
  • LPC: Ligand-Protein Contacts for 4PJI
  • CSU: Contacts of Structural Units for 4PJI
  • Structure Factors (1885 Kb)
  • Retrieve 4PJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PJI from S2C, [Save to disk]
  • Re-refined 4pji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PJI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PJI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pji] [4pji_C] [4pji_B] [4pji_H] [4pji_D] [4pji_A] [4pji_G] [4pji_E] [4pji_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PJI: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4PJI
  • Community annotation for 4PJI at PDBWiki (http://pdbwiki.org)

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