4PJM Myosin VI motor domain in the Pi release state, space group P212121 - soaked with PO4 - located in the active site date
authors Isabet, T., Benisty, H., Llinas, P., Sweeney, H.L., Houdusse, A.
compound source
symmetry
R_factor
R_Free 0.1959
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand ADP, GOL, IPA, MG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHow actin initiates the motor activity of Myosin., Llinas P, Isabet T, Song L, Ropars V, Zong B, Benisty H, Sirigu S, Morris C, Kikuti C, Safer D, Sweeney HL, Houdusse A, Dev Cell. 2015 May 26;33(4):401-12. doi: 10.1016/j.devcel.2015.03.025. Epub 2015 , Apr 30. PMID:25936506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (4pjm.pdb1.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 4PJM
  • CSU: Contacts of Structural Units for 4PJM
  • Structure Factors (482 Kb)
  • Retrieve 4PJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PJM from S2C, [Save to disk]
  • Re-refined 4pjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PJM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PJM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pjm_A] [4pjm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PJM: [MYSc ] by SMART
    • Other resources with information on 4PJM
  • Community annotation for 4PJM at PDBWiki (http://pdbwiki.org)

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