4PJR Crystal structure of designed cPPR-NRE protein date
authors Coquille, S.C., Filipovska, A., Chia, T.S., Rajappa, L., Lingford, J.P., Razif, M.F.M., Thore, S., Rackham, O.
compound source
symmetry
R_factor
R_Free 0.2218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand MG enzyme
Primary referenceAn artificial PPR scaffold for programmable RNA recognition., Coquille S, Filipovska A, Chia T, Rajappa L, Lingford JP, Razif MF, Thore S, Rackham O, Nat Commun. 2014 Dec 17;5:5729. doi: 10.1038/ncomms6729. PMID:25517350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4pjr.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4PJR
  • CSU: Contacts of Structural Units for 4PJR
  • Structure Factors (593 Kb)
  • Retrieve 4PJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PJR from S2C, [Save to disk]
  • Re-refined 4pjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PJR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PJR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pjr_A] [4pjr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PJR
  • Community annotation for 4PJR at PDBWiki (http://pdbwiki.org)

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