OCA Atlas for 4PKN

4PKN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP, BEF, K, MG

enzyme

Gene

BN17 ; BN17 ; BU34 ; BU34 ; LF82 ; LF82

Gene
Ontology

Chain	Function	Process	Component
G, K, D, I, A, J, L, F, E, H, M, N, B, C
W, 2, X, R, Q, 1, V, U, S, Y, P, T, Z, O

Primary reference

Formation and structures of GroEL:GroES2 chaperonin footballs, the protein-folding functional form., Fei X, Ye X, LaRonde NA, Lorimer GH, Proc Natl Acad Sci U S A. 2014 Aug 18. pii: 201412922. PMID:25136110

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2755 Kb) [Save to disk]

Biological Unit Coordinates (4pkn.pdb1.gz) 2725 Kb

LPC: Ligand-Protein Contacts for 4PKN

CSU: Contacts of Structural Units for 4PKN

Structure Factors (2293 Kb)

Retrieve 4PKN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4PKN from S2C, [Save to disk]

Re-refined 4pkn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PKN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pkn] [4pkn_1] [4pkn_2] [4pkn_A] [4pkn_B] [4pkn_C] [4pkn_D] [4pkn_E] [4pkn_F] [4pkn_G] [4pkn_H] [4pkn_I] [4pkn_J] [4pkn_K] [4pkn_L] [4pkn_M] [4pkn_N] [4pkn_O] [4pkn_P] [4pkn_Q] [4pkn_R] [4pkn_S] [4pkn_T] [4pkn_U] [4pkn_V] [4pkn_W] [4pkn_X] [4pkn_Y] [4pkn_Z]

SWISS-PROT database:

Domain found in 4PKN: [Cpn10 ] by SMART

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