OCA Atlas for 4PKO

4PKO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP, BEF, K, MG

enzyme

Gene

BN17 ; BN17 ; BU34 ; BU34 ; LF82 ; LF82

Gene
Ontology

Chain	Function	Process	Component
N, B, G, K, C, I, F, A, H, E, D, M, J, L
Y, P, V, W, Z, T, O, Q, R, 1, U, 2, X, S

Primary reference

Formation and structures of GroEL:GroES2 chaperonin footballs, the protein-folding functional form., Fei X, Ye X, LaRonde NA, Lorimer GH, Proc Natl Acad Sci U S A. 2014 Aug 18. pii: 201412922. PMID:25136110

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2798 Kb) [Save to disk]

Biological Unit Coordinates (4pko.pdb1.gz) 2767 Kb

LPC: Ligand-Protein Contacts for 4PKO

CSU: Contacts of Structural Units for 4PKO

Structure Factors (2943 Kb)

Retrieve 4PKO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4PKO from S2C, [Save to disk]

Re-refined 4pko structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PKO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pko] [4pko_1] [4pko_2] [4pko_A] [4pko_B] [4pko_C] [4pko_D] [4pko_E] [4pko_F] [4pko_G] [4pko_H] [4pko_I] [4pko_J] [4pko_K] [4pko_L] [4pko_M] [4pko_N] [4pko_O] [4pko_P] [4pko_Q] [4pko_R] [4pko_S] [4pko_T] [4pko_U] [4pko_V] [4pko_W] [4pko_X] [4pko_Y] [4pko_Z]

SWISS-PROT database:

Domain found in 4PKO: [Cpn10 ] by SMART

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