4PLO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, NAG, SO4 enzyme
Primary referenceNeural migration. Structures of netrin-1 bound to two receptors provide insight into its axon guidance mechanism., Xu K, Wu Z, Renier N, Antipenko A, Tzvetkova-Robev D, Xu Y, Minchenko M, Nardi-Dei V, Rajashankar KR, Himanen J, Tessier-Lavigne M, Nikolov DB, Science. 2014 Jun 13;344(6189):1275-9. doi: 10.1126/science.1255149. Epub 2014, May 29. PMID:24876346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4plo.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 4PLO
  • CSU: Contacts of Structural Units for 4PLO
  • Structure Factors (144 Kb)
  • Retrieve 4PLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PLO from S2C, [Save to disk]
  • Re-refined 4plo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4plo] [4plo_A] [4plo_B]
  • SWISS-PROT database:
  • Domains found in 4PLO: [EGF_Lam] [FN3] [LamNT ] by SMART

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