4PM0 PDE7A catalytic domain in complex with 2-(Cyclopentylamino)thieno[3,2-d]pyrimidin-4(3H)-one derivative date
authors Kawai, K., Endo, Y., Asano, T., Amano, S., Sawada, K., Ueo, N., Takahashi, N., Sonoda, Y., Kamei, N., Nagata, N.
compound source
symmetry
R_factor
R_Free 0.21763
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 32V, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 2-(Cyclopentylamino)thieno[3,2-d]pyrimidin-4(3H)-one Derivatives as a New Series of Potent Phosphodiesterase 7 Inhibitors., Kawai K, Endo Y, Asano T, Amano S, Sawada K, Ueo N, Takahashi N, Sonoda Y, Nagai M, Kamei N, Nagata N, J Med Chem. 2014 Nov 19. PMID:25383422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (4pm0.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4PM0
  • CSU: Contacts of Structural Units for 4PM0
  • Structure Factors (524 Kb)
  • Retrieve 4PM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PM0 from S2C, [Save to disk]
  • Re-refined 4pm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PM0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PM0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pm0_A] [4pm0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PM0: [HDc ] by SMART
  • Other resources with information on 4PM0
  • Community annotation for 4PM0 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science