4PNZ Human dipeptidyl peptidase IV/CD26 in complex with the long-acting inhibitor Omarigliptin (MK-3102) date 2014-02-22
authors Scapin, G., Yan, Y.
compound source
symmetry
R_factor
R_Free 0.1974
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 2VH, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • virus receptor activity
  • chemorepellent activity


    • Primary referenceOmarigliptin (MK-3102): A Novel Long-Acting DPP-4 Inhibitor for Once-Weekly Treatment of Type 2 Diabetes., Biftu T, Sinha-Roy R, Chen P, Qian X, Feng D, Kuethe JT, Scapin G, Gao YD, Yan Y, Krueger D, Bak A, Eiermann G, He J, Cox J, Hicks J, Lyons K, He H, Salituro G, Tong S, Patel S, Doss G, Petrov A, Wu J, Xu SS, Sewall C, Zhang X, Zhang B, Thornberry NA, Weber AE, J Med Chem. 2014 Apr 2. PMID:24660890
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (4pnz.pdb1.gz) 272 Kb
  • LPC: Ligand-Protein Contacts for 4PNZ
  • CSU: Contacts of Structural Units for 4PNZ
  • Structure Factors (4069 Kb)
  • Retrieve 4PNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PNZ from S2C, [Save to disk]
  • Re-refined 4pnz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PNZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PNZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pnz_A] [4pnz_B] [4pnz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PNZ
  • Community annotation for 4PNZ at PDBWiki (http://pdbwiki.org)

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