4POC Structure of Triosephosphate Isomerase Wild Type human enzyme. date
authors Amrich, C.G., Aslam, A.A., Heroux, A., VanDemark, A.P.
compound source
symmetry
R_factor
R_Free 0.1873
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand BR, K, NA, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTriosephosphate isomerase I170V alters catalytic site, enhances stability and induces pathology in a Drosophila model of TPI deficiency., Roland BP, Amrich CG, Kammerer CJ, Stuchul KA, Larsen SB, Rode S, Aslam AA, Heroux A, Wetzel R, VanDemark AP, Palladino MJ, Biochim Biophys Acta. 2015 Jan;1852(1):61-9. doi: 10.1016/j.bbadis.2014.10.010., Epub 2014 Oct 16. PMID:25463631
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (4poc.pdb1.gz) 231 Kb
  • LPC: Ligand-Protein Contacts for 4POC
  • CSU: Contacts of Structural Units for 4POC
  • Structure Factors (1305 Kb)
  • Retrieve 4POC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4POC from S2C, [Save to disk]
  • Re-refined 4poc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4POC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4POC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4POC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4poc_B] [4poc_A] [4poc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4POC
  • Community annotation for 4POC at PDBWiki (http://pdbwiki.org)

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