4PPE human RNF4 RING domain date 2014-02-26
authors Perry, J.J., Arvai, A.S., Hitomi, C., Tainer, J.A.
compound source
symmetry
R_factor
R_Free 0.2802
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response., Groocock LM, Nie M, Prudden J, Moiani D, Wang T, Cheltsov A, Rambo RP, Arvai AS, Hitomi C, Tainer JA, Luger K, Perry JJ, Lazzerini-Denchi E, Boddy MN, EMBO Rep. 2014 May;15(5):601-8. doi: 10.1002/embr.201338369. Epub 2014 Apr 8. PMID:24714598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (4ppe.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (4ppe.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4PPE
  • CSU: Contacts of Structural Units for 4PPE
  • Structure Factors (92 Kb)
  • Retrieve 4PPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PPE from S2C, [Save to disk]
  • Re-refined 4ppe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PPE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PPE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ppe_B] [4ppe] [4ppe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PPE: [RING ] by SMART
    • Other resources with information on 4PPE
  • Community annotation for 4PPE at PDBWiki (http://pdbwiki.org)

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