4PPX DNA Polymerase Beta E295K with Spiroiminodihydantoin in Templating Position date
authors Eckenroth, B.E., Doublie, S.
compound source
symmetry
R_factor
R_Free 0.2171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.08
ligand NA, SDH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of DNA Polymerase beta with DNA Containing the Base Lesion Spiroiminodihydantoin in a Templating Position., Eckenroth BE, Fleming AM, Sweasy JB, Burrows CJ, Doublie S, Biochemistry. 2014 Mar 26. PMID:24649945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4ppx.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 4PPX
  • CSU: Contacts of Structural Units for 4PPX
  • Structure Factors (1850 Kb)
  • Retrieve 4PPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PPX from S2C, [Save to disk]
  • Re-refined 4ppx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PPX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PPX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ppx_D] [4ppx_T] [4ppx] [4ppx_A] [4ppx_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PPX: [HhH1] [POLXc ] by SMART
    • Other resources with information on 4PPX
  • Community annotation for 4PPX at PDBWiki (http://pdbwiki.org)

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