4PRG Receptor date May 07, 1999
title 0072 Partial Agonist Ppar Gamma Cocrystal
authors M.V.Milburn
compound source
Molecule: Protein (Peroxisome Proliferator Activated Recept
Chain: A, B, C, D
Fragment: Ligand Binding Domain, Residues 207-476
Engineered: Yes
Other_details: 0072 Partial Agonist Cocrystal
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hppargamma
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Plasmid Is Prset A
symmetry Space Group: P 1 2 1
R_factor 0.240 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.720 61.540 118.810 90.00 102.57 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 072 enzyme
related structures by homologous chain: 1KKQ, 1L2J, 3PRG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA peroxisome proliferator-activated receptor gamma ligand inhibits adipocyte differentiation., Oberfield JL, Collins JL, Holmes CP, Goreham DM, Cooper JP, Cobb JE, Lenhard JM, Hull-Ryde EA, Mohr CP, Blanchard SG, Parks DJ, Moore LB, Lehmann JM, Plunket K, Miller AB, Milburn MV, Kliewer SA, Willson TM, Proc Natl Acad Sci U S A 1999 May 25;96(11):6102-6. PMID:10339548
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (4prg.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 4PRG
  • CSU: Contacts of Structural Units for 4PRG
  • Likely Quarternary Molecular Structure file(s) for 4PRG
  • Structure Factors (282 Kb)
  • Retrieve 4PRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PRG from S2C, [Save to disk]
  • Re-refined 4prg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PRG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PRG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4prga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d4prgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d4prgc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d4prgd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 4prg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4prg] [4prg_B] [4prg_C] [4prg_D] [4prg_A]
  • SWISS-PROT database: [P37231]
  • Domain organization of [PPARG_HUMAN] by SWISSPFAM
  • Domain found in 4PRG: [HOLI ] by SMART
  • Other resources with information on 4PRG
  • Community annotation for 4PRG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 4PRG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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