4PTE Structure of a carvoxamide compound (15) (N-[4-(ISOQUINOLIN-7-YL)PYRIDIN-2-YL]CYCLOPROPANECARBOXAMIDE) to GSK3b date
authors Lewis, H.A., Sivaprakasam, P., Kish, K., Pokross, M., Dubowchik, G.M.
compound source
symmetry
R_factor
R_Free 0.1947
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.03
ligand 2WF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...
  • excitatory postsynaptic pote...
  • positive regulation of mitoc...
  • beta-catenin destruction com...
  • Primary referenceDiscovery of new acylaminopyridines as GSK-3 inhibitors by a structure guided in-depth exploration of chemical space around a pyrrolopyridinone core., Sivaprakasam P, Han X, Civiello RL, Jacutin-Porte S, Kish K, Pokross M, Lewis HA, Ahmed N, Szapiel N, Newitt JA, Baldwin ET, Xiao H, Krause CM, Park H, Nophsker M, Lippy JS, Burton CR, Langley DR, Macor JE, Dubowchik GM, Bioorg Med Chem Lett. 2015 May 1;25(9):1856-63. doi: 10.1016/j.bmcl.2015.03.046. , Epub 2015 Mar 24. PMID:25845281
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (4pte.pdb1.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 4PTE
  • CSU: Contacts of Structural Units for 4PTE
  • Structure Factors (1345 Kb)
  • Retrieve 4PTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PTE from S2C, [Save to disk]
  • Re-refined 4pte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PTE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PTE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pte_B] [4pte_A] [4pte]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PTE: [S_TKc ] by SMART
  • Other resources with information on 4PTE
  • Community annotation for 4PTE at PDBWiki (http://pdbwiki.org)

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