4PUZ Crystal structure of spleen tyrosine kinase (Syk) in complex with GS-9973 date 2014-03-14
authors Lansdon, E.B., Mitchell, S.A.
compound source
symmetry
R_factor
R_Free 0.2612
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.08
ligand CG9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of GS-9973, a Selective and Orally Efficacious Inhibitor of Spleen Tyrosine Kinase., Currie KS, Kropf JE, Lee T, Blomgren P, Xu J, Zhao Z, Gallion S, Whitney JA, Maclin D, Lansdon EB, Maciejewski P, Rossi AM, Rong H, Macaluso J, Barbosa J, Di Paolo JA, Mitchell SA, J Med Chem. 2014 May 8;57(9):3856-73. doi: 10.1021/jm500228a. Epub 2014 Apr 29. PMID:24779514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4puz.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (4puz.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4PUZ
  • CSU: Contacts of Structural Units for 4PUZ
  • Structure Factors (440 Kb)
  • Retrieve 4PUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PUZ from S2C, [Save to disk]
  • Re-refined 4puz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PUZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PUZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4puz_B] [4puz] [4puz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PUZ: [TyrKc ] by SMART
    • Other resources with information on 4PUZ
  • Community annotation for 4PUZ at PDBWiki (http://pdbwiki.org)

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