4PWD Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine date
authors Das, K., Martinez, S.E., Arnold, E.
compound source
symmetry
R_factor
R_Free 0.2909
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand CA, NVP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructures of HIV-1 RT-RNA/DNA ternary complexes with dATP and nevirapine reveal conformational flexibility of RNA/DNA: insights into requirements for RNase H cleavage., Das K, Martinez SE, Bandwar RP, Arnold E, Nucleic Acids Res. 2014 May 31. pii: gku487. PMID:24880687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (356 Kb) [Save to disk]
  • Biological Unit Coordinates (4pwd.pdb1.gz) 178 Kb
  • Biological Unit Coordinates (4pwd.pdb2.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 4PWD
  • CSU: Contacts of Structural Units for 4PWD
  • Structure Factors (519 Kb)
  • Retrieve 4PWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PWD from S2C, [Save to disk]
  • Re-refined 4pwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PWD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PWD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pwd_E] [4pwd] [4pwd_F] [4pwd_B] [4pwd_T] [4pwd_P] [4pwd_D] [4pwd_A] [4pwd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PWD
  • Community annotation for 4PWD at PDBWiki (http://pdbwiki.org)

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