4PYU The conserved ubiquitin-like protein hub1 plays a critical role in splicing in human cells date
authors Ammon, T., Mishra, S.K., Kowalska, K., Popowicz, G.M., Holak, T.A., Jentsch, S.
compound source
symmetry
R_factor
R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Gene
Ontology
ChainFunctionProcessComponent
S, A, O, K, B, G


T, P, H, C, D, L


Primary referenceThe conserved ubiquitin-like protein Hub1 plays a critical role in splicing in human cells., Ammon T, Mishra SK, Kowalska K, Popowicz GM, Holak TA, Jentsch S, J Mol Cell Biol. 2014 Aug;6(4):312-23. doi: 10.1093/jmcb/mju026. Epub 2014 May, 28. PMID:24872507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4pyu.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (4pyu.pdb2.gz) 17 Kb
  • Biological Unit Coordinates (4pyu.pdb3.gz) 17 Kb
  • Biological Unit Coordinates (4pyu.pdb4.gz) 17 Kb
  • Biological Unit Coordinates (4pyu.pdb5.gz) 17 Kb
  • Biological Unit Coordinates (4pyu.pdb6.gz) 17 Kb
  • CSU: Contacts of Structural Units for 4PYU
  • Structure Factors (292 Kb)
  • Retrieve 4PYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PYU from S2C, [Save to disk]
  • Re-refined 4pyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PYU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PYU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pyu_L] [4pyu_H] [4pyu_P] [4pyu_G] [4pyu] [4pyu_C] [4pyu_B] [4pyu_S] [4pyu_D] [4pyu_T] [4pyu_O] [4pyu_K] [4pyu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PYU
  • Community annotation for 4PYU at PDBWiki (http://pdbwiki.org)

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