4PZI Transcription Dna date Mar 31, 2014
title Zinc Finger Region Of Mll2 In Complex With Cpg Dna
authors X.Chao, W.Tempel, K.Liu, A.Dong, C.Bountra, J.Weigelt, C.H.Arrowsm A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase 2b
Chain: A
Synonym: Lysine N-Methyltransferase 2b, Myeloidlymphoid Or Lineage Leukemia Protein 4, Trithorax Homolog 2, Ww Domain- Protein 7, Wbp-7;
Ec: 2.1.1.43
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2b, Hrx2, Kiaa0304, Mll2, Mll4, Trx2, Wbp7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl

Molecule: Dna (5'-D(Gpcpcpapcpcpgpgptpgpgpc)-3'
Chain: B, C
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Dna
symmetry Space Group: C 1 2 1
R_factor 0.226 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.736 41.005 55.508 90.00 99.24 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand UNX, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants., Xu C, Liu K, Lei M, Yang A, Li Y, Hughes TR, Min J, Structure. 2017 Dec 16. pii: S0969-2126(17)30396-9. doi:, 10.1016/j.str.2017.11.022. PMID:29276034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4pzi.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 4PZI
  • CSU: Contacts of Structural Units for 4PZI
  • Structure Factors (386 Kb)
  • Retrieve 4PZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PZI from S2C, [Save to disk]
  • Re-refined 4pzi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PZI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PZI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pzi_B] [4pzi] [4pzi_A] [4pzi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PZI
  • Community annotation for 4PZI at PDBWiki (http://pdbwiki.org)

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