4Q10 The catalytic core of Rad2 in complex with DNA substrate (complex IV) date
authors Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Nowotny, M.
compound source
symmetry
R_factor
R_Free 0.2841
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand CA, K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding., Mietus M, Nowak E, Jaciuk M, Kustosz P, Studnicka J, Nowotny M, Nucleic Acids Res. 2014 Aug 12. pii: gku729. PMID:25120270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4q10.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 4Q10
  • CSU: Contacts of Structural Units for 4Q10
  • Structure Factors (714 Kb)
  • Retrieve 4Q10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q10 from S2C, [Save to disk]
  • Re-refined 4q10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Q10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Q10, from MSDmotif at EBI
  • Fold representative 4q10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q10_A] [4q10_B] [4q10_D] [4q10] [4q10_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Q10: [HhH2] [XPGI] [XPGN ] by SMART
  • Other resources with information on 4Q10
  • Community annotation for 4Q10 at PDBWiki (http://pdbwiki.org)

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