4Q29 Ensemble Refinement of plu4264 protein from Photorhabdus luminescens date
authors Wang, F., Michalska, K., Li, H., Jedrzejczak, R., Babnigg, G., Bingman, C.A., Yennamalli, R., Weerth, S., Miller, M.D., Thomas, M.G., Joachimiak, A., Phillips, G.N., NatPro, Enzyme.Discovery.for.Natural.Product.Biosynthesis., MCSG, Midwest.Center.for.Structural.Genomics.
compound source
R_Free 0.1553
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand MSE, NA, NI enzyme
Primary referenceStructure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 A resolution., Weerth RS, Michalska K, Bingman CA, Yennamalli RM, Li H, Jedrzejczak R, Wang F, Babnigg G, Joachimiak A, Thomas MG, Phillips GN, Proteins. 2014 Oct 30. doi: 10.1002/prot.24705. PMID:25354690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3755 Kb) [Save to disk]
  • Biological Unit Coordinates (4q29.pdb1.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 4Q29
  • CSU: Contacts of Structural Units for 4Q29
  • Structure Factors (1319 Kb)
  • Retrieve 4Q29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q29 from S2C, [Save to disk]
  • View 4Q29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q29
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q29, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q29_A] [4q29_B] [4q29]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Q29
  • Community annotation for 4Q29 at PDBWiki (http://pdbwiki.org)

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