4Q5H Shigella Effector Kinase OspG bound to AMPPNP and E2-Ub UbcH7-Ub Conjugate date
authors Cygler, M., Grishin, A.M., BSGI, Montreal-Kingston.Bacterial.Structural.Genomics.Initiative.
compound source
symmetry
R_factor
R_Free 0.2278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ANP, MG enzyme
Gene SSON
Gene
Ontology
ChainFunctionProcessComponent
C
  • transcription coactivator ac...


    • Primary referenceStructural Basis for the Inhibition of Host Protein Ubiquitination by Shigella Effector Kinase OspG., Grishin AM, Condos TE, Barber KR, Campbell-Valois FX, Parsot C, Shaw GS, Cygler M, Structure. 2014 Jun 10;22(6):878-88. doi: 10.1016/j.str.2014.04.010. Epub 2014, May 22. PMID:24856362
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (4q5h.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 4Q5H
  • CSU: Contacts of Structural Units for 4Q5H
  • Structure Factors (526 Kb)
  • Retrieve 4Q5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q5H from S2C, [Save to disk]
  • Re-refined 4q5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Q5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Q5H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q5H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q5h_C] [4q5h_B] [4q5h_A] [4q5h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Q5H: [UBCc] [UBQ ] by SMART
    • Other resources with information on 4Q5H
  • Community annotation for 4Q5H at PDBWiki (http://pdbwiki.org)

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