4Q5Z Hydrolase date Apr 18, 2014
title Crystal Structure Analysis Of Fab-Bound Human Insulin Degrad (Ide) In Complex With Insulin
authors L.A.Mccord, W.G.Liang, M.Farcasanu, A.G.Wang, S.Koide, W.J.Tang
compound source
Molecule: Insulin-Degrading Enzyme
Chain: A, B, C, D, E, F, G, H
Synonym: Abeta-Degrading Protease, Insulin Protease, Insuli Insulysin;
Ec: 3.4.24.56
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ide
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ide-Bound Fab, Heavy Chain
Chain: I, K, M, O, Q, S, U, W
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ide-Bound Fab, Light Chain
Chain: J, L, N, P, R, T, V, X
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Insulin A Chain
Chain: a, b, c, d, e, f, g, h
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ins

Molecule: Insulin B Chain
Chain: x
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ins
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.589 138.190 376.509 90.00 99.36 90.00
method X-Ray Diffractionresolution 3.93 Å
ligand ZN enzyme Hydrolase E.C.3.4.24.56 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • virus receptor activity


  • X


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3666 Kb) [Save to disk]
  • Biological Unit Coordinates (4q5z.pdb1.gz) 479 Kb
  • Biological Unit Coordinates (4q5z.pdb2.gz) 485 Kb
  • Biological Unit Coordinates (4q5z.pdb3.gz) 472 Kb
  • Biological Unit Coordinates (4q5z.pdb4.gz) 476 Kb
  • Biological Unit Coordinates (4q5z.pdb5.gz) 471 Kb
  • Biological Unit Coordinates (4q5z.pdb6.gz) 469 Kb
  • Biological Unit Coordinates (4q5z.pdb7.gz) 472 Kb
  • Biological Unit Coordinates (4q5z.pdb8.gz) 482 Kb
  • LPC: Ligand-Protein Contacts for 4Q5Z
  • CSU: Contacts of Structural Units for 4Q5Z
  • Structure Factors (741 Kb)
  • Retrieve 4Q5Z in mmCIF format [Save to disk]
  • Re-refined 4q5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Q5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q5Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4q5z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q5z_g] [4q5z_E] [4q5z_K] [4q5z_D] [4q5z_H] [4q5z_f] [4q5z_P] [4q5z_N] [4q5z_b] [4q5z_I] [4q5z_G] [4q5z_c] [4q5z_W] [4q5z_L] [4q5z_M] [4q5z_X] [4q5z_O] [4q5z_e] [4q5z_h] [4q5z_A] [4q5z_Q] [4q5z_V] [4q5z_U] [4q5z_F] [4q5z_a] [4q5z_S] [4q5z_x] [4q5z_C] [4q5z_d] [4q5z_B] [4q5z_J] [4q5z] [4q5z_T] [4q5z_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Q5Z: [IG_like] [IGv] [IlGF ] by SMART
  • Other resources with information on 4Q5Z
  • Community annotation for 4Q5Z at PDBWiki (http://pdbwiki.org)

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