4Q6F Transcription date Apr 22, 2014
title Crystal Structure Of Human Baz2a Phd Zinc Finger In Complex Unmodified H3k4 Histone Peptide
authors C.Tallant, L.Overvoorde, T.Krojer, P.Filippakopoulos, F.Von Delf C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Ciulli, S.Knapp, Struc Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain Adjacent To Zinc Finger Domain Protei
Chain: A, B, C, D
Fragment: Unp Residues 1673-1728
Synonym: Transcription Termination Factor I-Interacting Pro Ttf-I-Interacting Protein 5, Tip5, Hwalp3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Baz2a, Kiaa0314, Tip5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Unmodified H3k4 Peptide
Chain: F, G, H
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.183 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.866 71.866 98.767 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand EDO, ZN enzyme
Primary referenceMolecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC., Tallant C, Valentini E, Fedorov O, Overvoorde L, Ferguson FM, Filippakopoulos P, Svergun DI, Knapp S, Ciulli A, Structure. 2015 Jan 6;23(1):80-92. doi: 10.1016/j.str.2014.10.017. Epub 2014 Dec , 18. PMID:25533489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4q6f.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (4q6f.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (4q6f.pdb3.gz) 19 Kb
  • Biological Unit Coordinates (4q6f.pdb4.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 4Q6F
  • CSU: Contacts of Structural Units for 4Q6F
  • Structure Factors (385 Kb)
  • Retrieve 4Q6F in mmCIF format [Save to disk]
  • Re-refined 4q6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Q6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q6F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Q6F, from MSDmotif at EBI
  • Fold representative 4q6f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q6f_A] [4q6f_C] [4q6f_G] [4q6f_B] [4q6f_F] [4q6f] [4q6f_H] [4q6f_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Q6F: [PHD ] by SMART
  • Other resources with information on 4Q6F
  • Community annotation for 4Q6F at PDBWiki (http://pdbwiki.org)

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