4Q8E Human DNA polymerase eta inserting dCMPNPP opposite a phenanthriplatin adducted G date
authors Gregory, M.T., Yang, W.
compound source
symmetry
R_factor
R_Free 0.2253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand 0KX, GOL, MG, P9G enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic studies of polymerase eta bypass of phenanthriplatin DNA damage., Gregory MT, Park GY, Johnstone TC, Lee YS, Yang W, Lippard SJ, Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9133-8. doi:, 10.1073/pnas.1405739111. Epub 2014 Jun 9. PMID:24927576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (4q8e.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4Q8E
  • CSU: Contacts of Structural Units for 4Q8E
  • Structure Factors (1115 Kb)
  • Retrieve 4Q8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q8E from S2C, [Save to disk]
  • Re-refined 4q8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Q8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q8E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q8E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q8e] [4q8e_A] [4q8e_P] [4q8e_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Q8E
  • Community annotation for 4Q8E at PDBWiki (http://pdbwiki.org)

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