4Q9U Crystal structure of the Rab5, Rabex-5delta and Rabaptin-5C21 complex date
authors Zhang, Z., Zhang, T., Ding, J.
compound source
symmetry
R_factor
R_Free 0.3427
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.62
Gene
Ontology
ChainFunctionProcessComponent
F, B


H, D, C, G


Primary referenceMolecular mechanism for Rabex-5 GEF activation by Rabaptin-5., Zhang Z, Zhang T, Wang S, Gong Z, Tang C, Chen J, Ding J, Elife (Cambridge). 2014 Jun 23:e02687. doi: 10.7554/eLife.02687. PMID:24957337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (424 Kb) [Save to disk]
  • Biological Unit Coordinates (4q9u.pdb1.gz) 418 Kb
  • CSU: Contacts of Structural Units for 4Q9U
  • Structure Factors (214 Kb)
  • Retrieve 4Q9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q9U from S2C, [Save to disk]
  • Re-refined 4q9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Q9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Q9U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q9U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q9u_H] [4q9u_E] [4q9u_C] [4q9u] [4q9u_A] [4q9u_G] [4q9u_B] [4q9u_D] [4q9u_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Q9U: [RAB] [VPS9 ] by SMART
    • Other resources with information on 4Q9U
  • Community annotation for 4Q9U at PDBWiki (http://pdbwiki.org)

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