4QA3 Crystal structure of T311M HDAC8 in complex with Trichostatin A (TSA) date
authors Decroos, C., Bowman, C.B., Moser, J.A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.
compound source
symmetry
R_factor
R_Free 0.2337
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.88
ligand GOL, K, TSN, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCompromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders., Decroos C, Bowman CM, Moser JA, Christianson KE, Deardorff MA, Christianson DW, ACS Chem Biol. 2014 Jul 30. PMID:25075551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4qa3.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (4qa3.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (4qa3.pdb3.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 4QA3
  • CSU: Contacts of Structural Units for 4QA3
  • Structure Factors (261 Kb)
  • Retrieve 4QA3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QA3 from S2C, [Save to disk]
  • Re-refined 4qa3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QA3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QA3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QA3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u4qa3, region A:1879-1979 [Jmol] [rasmolscript] [script source]
        - Domain d1k4qa3, region A:364-478 [Jmol] [rasmolscript] [script source]
        - Domain d1h4qa3, region A:404-477 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qa3_A] [4qa3] [4qa3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QA3
  • Community annotation for 4QA3 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science