4QA6 Crystal structure of I243N/Y306F HDAC8 in complex with a tetrapeptide substrate date
authors Decroos, C., Bowman, C.B., Moser, J.A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.
compound source
symmetry
R_factor
R_Free 0.2118
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand ACE, ALY, GOL, K, MCM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCompromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders., Decroos C, Bowman CM, Moser JA, Christianson KE, Deardorff MA, Christianson DW, ACS Chem Biol. 2014 Jul 30. PMID:25075551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (4qa6.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (4qa6.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4QA6
  • CSU: Contacts of Structural Units for 4QA6
  • Structure Factors (730 Kb)
  • Retrieve 4QA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QA6 from S2C, [Save to disk]
  • Re-refined 4qa6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QA6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QA6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qa6_C] [4qa6_A] [4qa6] [4qa6_B] [4qa6_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QA6
  • Community annotation for 4QA6 at PDBWiki (http://pdbwiki.org)

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