4QC3 Crystal structure of human BAZ2B bromodomain in complex with a diacetylated histone 4 peptide (H4K8acK12ac) date
authors Tallant, C., Jose, B., Picaud, S., Chaikuad, A., Filippakopoulos, P., Burgess-Brown, N., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.18697
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand ALY, EDO enzyme
Primary referenceMolecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC., Tallant C, Valentini E, Fedorov O, Overvoorde L, Ferguson FM, Filippakopoulos P, Svergun DI, Knapp S, Ciulli A, Structure. 2015 Jan 6;23(1):80-92. doi: 10.1016/j.str.2014.10.017. Epub 2014 Dec , 18. PMID:25533489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4qc3.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4qc3.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4QC3
  • CSU: Contacts of Structural Units for 4QC3
  • Structure Factors (565 Kb)
  • Retrieve 4QC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QC3 from S2C, [Save to disk]
  • Re-refined 4qc3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QC3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QC3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qc3_B] [4qc3_A] [4qc3] [4qc3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QC3: [BROMO ] by SMART
  • Other resources with information on 4QC3
  • Community annotation for 4QC3 at PDBWiki (http://pdbwiki.org)

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