4QF2 Transcription date May 19, 2014
title Crystal Structure Of Human Baz2a Phd Zinc Finger In The Free
authors C.Tallant, L.Overvoorde, I.Van Molle, D.Y.Chirgadze, A.Ciulli
compound source
Molecule: Bromodomain Adjacent To Zinc Finger Domain Protei
Chain: A, B, C, D
Fragment: Unp Residues 1673-1728
Synonym: Transcription Termination Factor I-Interacting Pro Ttf-I-Interacting Protein 5, Tip5, Hwalp3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Baz2a, Kiaa0314, Tip5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43 21 2
R_factor 0.182 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.014 72.014 99.061 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, PO4, ZN enzyme
Primary referenceMolecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC., Tallant C, Valentini E, Fedorov O, Overvoorde L, Ferguson FM, Filippakopoulos P, Svergun DI, Knapp S, Ciulli A, Structure. 2015 Jan 6;23(1):80-92. doi: 10.1016/j.str.2014.10.017. Epub 2014 Dec , 18. PMID:25533489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4qf2.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (4qf2.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4QF2
  • CSU: Contacts of Structural Units for 4QF2
  • Structure Factors (541 Kb)
  • Retrieve 4QF2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QF2 from S2C, [Save to disk]
  • Re-refined 4qf2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QF2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QF2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4QF2, from MSDmotif at EBI
  • Fold representative 4qf2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qf2_C] [4qf2_B] [4qf2] [4qf2_D] [4qf2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QF2: [PHD ] by SMART
  • Other resources with information on 4QF2
  • Community annotation for 4QF2 at PDBWiki (http://pdbwiki.org)

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