4QJR Crystal structure of human nuclear receptor sf-1 (nr5a1) bound to its hormone pip3 at 2.4 a resolution date
authors JCSG, Joint.Center.for.Structural.Genomics., STEMCELL, Partnership.for.Stem.Cell.Biology.
compound source
symmetry
R_factor
R_Free 0.2296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ACT, PIZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe signaling phospholipid PIP3 creates a new interaction surface on the nuclear receptor SF-1., Blind RD, Sablin EP, Kuchenbecker KM, Chiu HJ, Deacon AM, Das D, Fletterick RJ, Ingraham HA, Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15054-9. doi:, 10.1073/pnas.1416740111. Epub 2014 Oct 6. PMID:25288771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (4qjr.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4QJR
  • CSU: Contacts of Structural Units for 4QJR
  • Structure Factors (1733 Kb)
  • Retrieve 4QJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QJR from S2C, [Save to disk]
  • Re-refined 4qjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QJR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QJR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qjr_B] [4qjr_A] [4qjr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QJR: [HOLI ] by SMART
  • Other resources with information on 4QJR
  • Community annotation for 4QJR at PDBWiki (http://pdbwiki.org)

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