4QKB	Oxidoreductase	date	Jun 05, 2014
title	Crystal Structure Of Seleno-Methionine Labelled Human Alkbh7 Complex With Alpha-Ketoglutarate And Mn(II)
authors	G.Wang, Q.He, Z.Chen
compound		source
Molecule: Alpha-Ketoglutarate-Dependent Dioxygenase Alkb Ho Mitochondrial; Chain: A, B, C Fragment: Unp Residues 17-215 Synonym: Alkylated Dna Repair Protein Alkb Homolog 7, Sperm Cell Proliferation-Related Protein, Spermatogenesis-Associa Protein 11; Ec: 1.14.11.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Abh7, Alkbh7, Spata11, Unq6002pro34564 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.158 R_Free 0.181
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.737 82.759 66.724 90.00 119.95 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	AKG, MN, MSE	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The atomic resolution structure of human AlkB homolog 7 (ALKBH7), a key protein for programmed necrosis and fat metabolism., Wang G, He Q, Feng C, Liu Y, Deng Z, Qi X, Wu W, Mei P, Chen Z, J Biol Chem. 2014 Oct 3;289(40):27924-36. doi: 10.1074/jbc.M114.590505. Epub 2014, Aug 13. PMID:25122757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (4qkb.pdb1.gz) 33 Kb Biological Unit Coordinates (4qkb.pdb2.gz) 33 Kb Biological Unit Coordinates (4qkb.pdb3.gz) 33 Kb Biological Unit Coordinates (4qkb.pdb4.gz) 92 Kb LPC: Ligand-Protein Contacts for 4QKB CSU: Contacts of Structural Units for 4QKB Structure Factors (194 Kb) Retrieve 4QKB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4QKB from S2C, [Save to disk] Re-refined 4qkb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4QKB in 3D

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Visual 3D analysis of 4QKB

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4QKB, from MSDmotif at EBI Fold representative 4qkb from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4qkb] [4qkb_A] [4qkb_B] [4qkb_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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