4QKH Dimeric form of human LLT1, a ligand for NKR-P1 date
authors Skalova, T., Blaha, J., Harlos, K., Duskova, J., Koval, T., Stransky, J., Hasek, J., Vanek, O., Dohnalek, J.
compound source
symmetry
R_factor
R_Free 0.24992
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand NAG enzyme
Primary referenceFour crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states., Skalova T, Blaha J, Harlos K, Duskova J, Koval' T, Stransky J, Hasek J, Vanek O, Dohnalek J, Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):578-91. doi:, 10.1107/S1399004714027928. Epub 2015 Feb 26. PMID:25760607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4qkh.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (4qkh.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (4qkh.pdb3.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 4QKH
  • CSU: Contacts of Structural Units for 4QKH
  • Structure Factors (1133 Kb)
  • Retrieve 4QKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QKH from S2C, [Save to disk]
  • Re-refined 4qkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QKH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QKH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qkh] [4qkh_A] [4qkh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QKH: [CLECT ] by SMART
  • Other resources with information on 4QKH
  • Community annotation for 4QKH at PDBWiki (http://pdbwiki.org)

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