4QM6 Structure of bacterial polynucleotide kinase bound to GTP and RNA date
authors Das, U., Wang, L.K., Smith, P., Shuman, S.
compound source
symmetry
R_factor
R_Free 0.1750
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand GTP, MG, NA, PO4 enzyme
Gene CTHE
Primary referenceStructures of bacterial polynucleotide kinase in a Michaelis complex with NTP*Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP*Mg2+ and a 5'-phosphorylated oligonucleotide., Das U, Wang LK, Smith P, Munir A, Shuman S, J Bacteriol. 2014 Sep 29. pii: JB.02197-14. PMID:25266383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4qm6.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4QM6
  • CSU: Contacts of Structural Units for 4QM6
  • Structure Factors (4251 Kb)
  • Retrieve 4QM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QM6 from S2C, [Save to disk]
  • Re-refined 4qm6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QM6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QM6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qm6] [4qm6_C] [4qm6_D] [4qm6_B] [4qm6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QM6
  • Community annotation for 4QM6 at PDBWiki (http://pdbwiki.org)

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