4QMD Cell Adhesion date Jun 16, 2014
title Crystal Structure Of Human Envoplakin Plakin Repeat Domain
authors F.Mohammed, C.Al-Jassar, S.A.White, C.Fogl, M.Jeeves, T.J.Knowles E.Odinstova, P.Rodriguez-Zamora, M.Overduin, M.Chidgey
compound source
Molecule: Envoplakin
Chain: A, B
Synonym: 210 Kda Cornified Envelope Precursor Protein, 210 Paraneoplastic Pemphigus Antigen, P210;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Evpl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppro-Ex-Htc
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.480 68.950 112.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanism of intermediate filament recognition by plakin repeat domains revealed by envoplakin targeting of vimentin., Fogl C, Mohammed F, Al-Jassar C, Jeeves M, Knowles TJ, Rodriguez-Zamora P, White SA, Odintsova E, Overduin M, Chidgey M, Nat Commun. 2016 Mar 3;7:10827. doi: 10.1038/ncomms10827. PMID:26935805
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4qmd.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (4qmd.pdb2.gz) 65 Kb
  • CSU: Contacts of Structural Units for 4QMD
  • Structure Factors (850 Kb)
  • Retrieve 4QMD in mmCIF format [Save to disk]
  • Re-refined 4qmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QMD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4qmd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qmd_A] [4qmd] [4qmd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QMD: [PLEC ] by SMART
  • Other resources with information on 4QMD
  • Community annotation for 4QMD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science