4QO8	Lactate Dehydrogenase A in complex with substituted 3-Hydroxy-2-mercaptocyclohex-2-enone compound 104	date
authors	Eigenbrot, C., Ultsch, M.
compound		source
symmetry		R_factor R_Free 0.2044
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	36U, EPE, LAC, NAI, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Identification of substituted 3-hydroxy-2-mercaptocyclohex-2-enones as potent inhibitors of human lactate dehydrogenase., Dragovich PS, Fauber BP, Boggs J, Chen J, Corson LB, Ding CZ, Eigenbrot C, Ge H, Giannetti AM, Hunsaker T, Labadie S, Li C, Liu Y, Liu Y, Ma S, Malek S, Peterson D, Pitts KE, Purkey HE, Robarge K, Salphati L, Sideris S, Ultsch M, VanderPorten E, Wang J, Wei B, Xu Q, Yen I, Yue Q, Zhang H, Zhang X, Zhou A, Bioorg Med Chem Lett. 2014 Aug 15;24(16):3764-71. doi:, 10.1016/j.bmcl.2014.06.076. Epub 2014 Jul 1. PMID:25037916

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk] Biological Unit Coordinates (4qo8.pdb1.gz) 448 Kb LPC: Ligand-Protein Contacts for 4QO8 CSU: Contacts of Structural Units for 4QO8 Structure Factors (1249 Kb) Retrieve 4QO8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4QO8 from S2C, [Save to disk] Re-refined 4qo8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4QO8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4QO8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4QO8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4qo8_A] [4qo8_B] [4qo8_D] [4qo8] [4qo8_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4QO8

Community annotation for 4QO8 at PDBWiki (http://pdbwiki.org)

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