4QPL Crystal structure of RNF146(RING-WWE)/UbcH5a/iso-ADPr complex date
authors Wang, Z., DaRosa, P.A., Klevit, R.E., Xu, W.
compound source
symmetry
R_factor
R_Free 0.2220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand V3L, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceAllosteric activation of the RNF146 ubiquitin ligase by a poly(ADP-ribosyl)ation signal., DaRosa PA, Wang Z, Jiang X, Pruneda JN, Cong F, Klevit RE, Xu W, Nature. 2014 Oct 19. doi: 10.1038/nature13826. PMID:25327252
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (4qpl.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (4qpl.pdb2.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 4QPL
  • CSU: Contacts of Structural Units for 4QPL
  • Structure Factors (2889 Kb)
  • Retrieve 4QPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QPL from S2C, [Save to disk]
  • Re-refined 4qpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QPL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QPL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qpl_B] [4qpl] [4qpl_A] [4qpl_C] [4qpl_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4QPL: [RING] [UBCc] [WWE ] by SMART
  • Other resources with information on 4QPL
  • Community annotation for 4QPL at PDBWiki (http://pdbwiki.org)

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