4QPQ	Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM	date
authors	Peng, Y., Lu, J., Wong, J., Edwards, R.A., Frost, L.S., Glover, J.N.M.
compound		source
symmetry		R_factor R_Free 0.2316
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.11
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM., Peng Y, Lu J, Wong JJ, Edwards RA, Frost LS, Mark Glover JN, J Mol Biol. 2014 Oct 2. pii: S0022-2836(14)00517-8. doi:, 10.1016/j.jmb.2014.09.018. PMID:25284757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (4qpq.pdb1.gz) 182 Kb CSU: Contacts of Structural Units for 4QPQ Structure Factors (251 Kb) Retrieve 4QPQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4QPQ from S2C, [Save to disk] Re-refined 4qpq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4QPQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4QPQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4QPQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4qpq_H] [4qpq_C] [4qpq_P] [4qpq_B] [4qpq_E] [4qpq_A] [4qpq_F] [4qpq_Q] [4qpq_G] [4qpq_D] [4qpq] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4QPQ

Community annotation for 4QPQ at PDBWiki (http://pdbwiki.org)

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