4QQY Crystal structure of T. fusca Cas3-ADP date
authors Ke, A., Huo, Y., Nam, K.H.
compound source
symmetry
R_factor
R_Free 0.2357
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.12
ligand ADP, FE enzyme
Gene TFU
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E
  • nuclease activity


    • Primary referenceStructures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation., Huo Y, Nam KH, Ding F, Lee H, Wu L, Xiao Y, Farchione MD Jr, Zhou S, Rajashankar K, Kurinov I, Zhang R, Ke A, Nat Struct Mol Biol. 2014 Aug 17. doi: 10.1038/nsmb.2875. PMID:25132177
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (591 Kb) [Save to disk]
  • Biological Unit Coordinates (4qqy.pdb1.gz) 152 Kb
  • Biological Unit Coordinates (4qqy.pdb2.gz) 152 Kb
  • Biological Unit Coordinates (4qqy.pdb3.gz) 153 Kb
  • Biological Unit Coordinates (4qqy.pdb4.gz) 151 Kb
  • Biological Unit Coordinates (4qqy.pdb5.gz) 295 Kb
  • Biological Unit Coordinates (4qqy.pdb6.gz) 296 Kb
  • LPC: Ligand-Protein Contacts for 4QQY
  • CSU: Contacts of Structural Units for 4QQY
  • Structure Factors (686 Kb)
  • Retrieve 4QQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QQY from S2C, [Save to disk]
  • Re-refined 4qqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QQY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qqy_E] [4qqy_A] [4qqy_C] [4qqy_B] [4qqy_D] [4qqy] [4qqy_F] [4qqy_G] [4qqy_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4QQY: [HDc] [HELICc3 ] by SMART
    • Other resources with information on 4QQY
  • Community annotation for 4QQY at PDBWiki (http://pdbwiki.org)

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