OCA Atlas for 4QRP

4QRP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

IOD, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, G		cellular response to iron io...

Primary reference

An Extensive Antigenic Footprint Underpins Immunodominant TCR Adaptability against a Hypervariable Viral Determinant., Nivarthi UK, Gras S, Kjer-Nielsen L, Berry R, Lucet IS, Miles JJ, Tracy SL, Purcell AW, Bowden DS, Hellard M, Rossjohn J, McCluskey J, Bharadwaj M, J Immunol. 2014 Oct 29. pii: 1401357. PMID:25355921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]

Biological Unit Coordinates (4qrp.pdb1.gz) 137 Kb

Biological Unit Coordinates (4qrp.pdb2.gz) 139 Kb

Biological Unit Coordinates (4qrp.pdb3.gz) 77 Kb

Biological Unit Coordinates (4qrp.pdb4.gz) 339 Kb

LPC: Ligand-Protein Contacts for 4QRP

CSU: Contacts of Structural Units for 4QRP

Structure Factors (1090 Kb)

Retrieve 4QRP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4QRP from S2C, [Save to disk]

Re-refined 4qrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4QRP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4qrp] [4qrp_A] [4qrp_B] [4qrp_C] [4qrp_D] [4qrp_E] [4qrp_F] [4qrp_G] [4qrp_H] [4qrp_I] [4qrp_J] [4qrp_K] [4qrp_L]

SWISS-PROT database:

Domains found in 4QRP: [IG] [IG_like] [IGc1 ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]