4QT1 JAK3 kinase domain in complex with 1-[(3S)-1-isobutylsulfonyl-3-piperidyl]-3-(5H-pyrrolo[2,3-b]pyrazin-2-yl)urea date
authors Kuglstatter, A., Shao, A.
compound source
symmetry
R_factor
R_Free 0.27256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 3C9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceScaffold hopping towards potent and selective JAK3 inhibitors: discovery of novel C-5 substituted pyrrolopyrazines., de Vicente J, Lemoine R, Bartlett M, Hermann JC, Hekmat-Nejad M, Henningsen R, Jin S, Kuglstatter A, Li H, Lovey AJ, Menke J, Niu L, Patel V, Petersen A, Setti L, Shao A, Tivitmahaisoon P, Vu MD, Soth M, Bioorg Med Chem Lett. 2014 Nov 1;24(21):4969-75. doi: 10.1016/j.bmcl.2014.09.031., Epub 2014 Sep 21. PMID:25262541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4qt1.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4QT1
  • CSU: Contacts of Structural Units for 4QT1
  • Structure Factors (198 Kb)
  • Retrieve 4QT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QT1 from S2C, [Save to disk]
  • Re-refined 4qt1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QT1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QT1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qt1] [4qt1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QT1: [TyrKc ] by SMART
  • Other resources with information on 4QT1
  • Community annotation for 4QT1 at PDBWiki (http://pdbwiki.org)

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