4QT8 Crystal Structure of RON Sema-PSI-IPT1 extracellular domains in complex with MSP beta-chain date
authors Herzberg, O., Chao, K.L.
compound source
symmetry
R_factor
R_Free 0.29077
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceStructural Basis for the Binding Specificity of Human RON Receptor Tyrosine Kinase to Macrophage Stimulating Protein., Chao KL, Gorlatova NV, Eisenstein E, Herzberg O, J Biol Chem. 2014 Sep 5. pii: jbc.M114.594341. PMID:25193665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (4qt8.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (4qt8.pdb2.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 4QT8
  • CSU: Contacts of Structural Units for 4QT8
  • Structure Factors (778 Kb)
  • Retrieve 4QT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QT8 from S2C, [Save to disk]
  • Re-refined 4qt8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QT8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QT8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qt8] [4qt8_C] [4qt8_D] [4qt8_A] [4qt8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4QT8: [IPT] [PSI] [Sema] [Tryp_SPc ] by SMART
  • Other resources with information on 4QT8
  • Community annotation for 4QT8 at PDBWiki (http://pdbwiki.org)

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