4QY1 Structure of H10 from human-infecting H10N8 in complex with avian receptor date
authors Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., Gao, G.F.
compound source
symmetry
R_factor
R_Free 0.2465
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.59
ligand GAL, NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, T, N, V, L, J, X, P, B, H, D, R


S, K, E, Q, M, C, A, O, W, I, G, U


Primary referenceStructural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus., Wang M, Zhang W, Qi J, Wang F, Zhou J, Bi Y, Wu Y, Sun H, Liu J, Huang C, Li X, Yan J, Shu Y, Shi Y, Gao GF, Nat Commun. 2015 Jan 9;6:5600. doi: 10.1038/ncomms6600. PMID:25574798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1902 Kb) [Save to disk]
  • Biological Unit Coordinates (4qy1.pdb1.gz) 480 Kb
  • Biological Unit Coordinates (4qy1.pdb2.gz) 481 Kb
  • Biological Unit Coordinates (4qy1.pdb3.gz) 484 Kb
  • Biological Unit Coordinates (4qy1.pdb4.gz) 483 Kb
  • LPC: Ligand-Protein Contacts for 4QY1
  • CSU: Contacts of Structural Units for 4QY1
  • Structure Factors (4177 Kb)
  • Retrieve 4QY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QY1 from S2C, [Save to disk]
  • Re-refined 4qy1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QY1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QY1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QY1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qy1_F] [4qy1_U] [4qy1_V] [4qy1_J] [4qy1_S] [4qy1_O] [4qy1_L] [4qy1_N] [4qy1_R] [4qy1_D] [4qy1_A] [4qy1_M] [4qy1_W] [4qy1_K] [4qy1_G] [4qy1_B] [4qy1_T] [4qy1_Q] [4qy1_H] [4qy1] [4qy1_I] [4qy1_P] [4qy1_X] [4qy1_C] [4qy1_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QY1
  • Community annotation for 4QY1 at PDBWiki (http://pdbwiki.org)

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