4QY2 Viral Protein date Jul 23, 2014
title Structure Of H10 From Human-Infecting H10n8 Virus In Complex Human Receptor Analog
authors M.Wang, W.Zhang, J.Qi, F.Wang, J.Zhou, Y.Bi, Y.Wu, H.Sun, J.Liu, C.Hu J.Yan, Y.Shu, Y.Shi, G.F.Gao
compound source
Molecule: Hemagglutinin
Chain: A, C, E, G, I, K
Engineered: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Ajiangxi-Donghu3462013(H10n8)
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus

Molecule: Hemagglutinin
Chain: B, D, F, H, J, L
Engineered: Yes

Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Ajiangxi-Donghu3462013(H10n8)
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1
R_factor 0.189 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.996 118.506 124.510 98.69 93.04 96.51
method X-Ray Diffractionresolution 2.40 Å
ligand NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceStructural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus., Wang M, Zhang W, Qi J, Wang F, Zhou J, Bi Y, Wu Y, Sun H, Liu J, Huang C, Li X, Yan J, Shu Y, Shi Y, Gao GF, Nat Commun. 2015 Jan 9;6:5600. doi: 10.1038/ncomms6600. PMID:25574798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (993 Kb) [Save to disk]
  • Biological Unit Coordinates (4qy2.pdb1.gz) 498 Kb
  • Biological Unit Coordinates (4qy2.pdb2.gz) 494 Kb
  • LPC: Ligand-Protein Contacts for 4QY2
  • CSU: Contacts of Structural Units for 4QY2
  • Structure Factors (2497 Kb)
  • Retrieve 4QY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QY2 from S2C, [Save to disk]
  • Re-refined 4qy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QY2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4QY2, from MSDmotif at EBI
  • Fold representative 4qy2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qy2_K] [4qy2_A] [4qy2_I] [4qy2_L] [4qy2_H] [4qy2_E] [4qy2_F] [4qy2_B] [4qy2] [4qy2_G] [4qy2_J] [4qy2_C] [4qy2_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QY2
  • Community annotation for 4QY2 at PDBWiki (http://pdbwiki.org)

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