4QY2 Structure of H10 from human-infecting H10N8 virus in complex with human receptor analog date
authors Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., Gao, G.F.
compound source
symmetry
R_factor
R_Free 0.2295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceStructural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus., Wang M, Zhang W, Qi J, Wang F, Zhou J, Bi Y, Wu Y, Sun H, Liu J, Huang C, Li X, Yan J, Shu Y, Shi Y, Gao GF, Nat Commun. 2015 Jan 9;6:5600. doi: 10.1038/ncomms6600. PMID:25574798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (967 Kb) [Save to disk]
  • Biological Unit Coordinates (4qy2.pdb1.gz) 485 Kb
  • Biological Unit Coordinates (4qy2.pdb2.gz) 482 Kb
  • LPC: Ligand-Protein Contacts for 4QY2
  • CSU: Contacts of Structural Units for 4QY2
  • Structure Factors (2497 Kb)
  • Retrieve 4QY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QY2 from S2C, [Save to disk]
  • Re-refined 4qy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QY2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QY2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qy2_K] [4qy2_A] [4qy2_I] [4qy2_L] [4qy2_H] [4qy2_E] [4qy2_F] [4qy2_B] [4qy2] [4qy2_G] [4qy2_J] [4qy2_C] [4qy2_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QY2
  • Community annotation for 4QY2 at PDBWiki (http://pdbwiki.org)

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