4QYJ Oxidoreductase date Jul 24, 2014
title Structure Of Phenylacetaldehyde Dehydrogenase From Pseudomon S12
authors A.G.Crabo, G.T.Gassner, M.H.Sazinsky
compound source
Molecule: Aldehyde Dehydrogenase
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 1215087
Strain: S12
Gene: Rppx_12610, Rppx_34495
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.254 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.090 118.690 304.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.83 Å
Gene RPPX ; RPPX
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathway., Crabo AG, Singh B, Nguyen T, Emami S, Gassner GT, Sazinsky MH, Arch Biochem Biophys. 2017 Feb 15;616:47-58. doi: 10.1016/j.abb.2017.01.011. Epub, 2017 Jan 31. PMID:28153386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1113 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyj.pdb1.gz) 557 Kb
  • Biological Unit Coordinates (4qyj.pdb2.gz) 554 Kb
  • CSU: Contacts of Structural Units for 4QYJ
  • Structure Factors (1871 Kb)
  • Retrieve 4QYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYJ from S2C, [Save to disk]
  • Re-refined 4qyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QYJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4qyj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyj_A] [4qyj] [4qyj_G] [4qyj_B] [4qyj_E] [4qyj_F] [4qyj_C] [4qyj_D] [4qyj_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QYJ
  • Community annotation for 4QYJ at PDBWiki (http://pdbwiki.org)

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