4QYJ Structure of Phenylacetaldehyde Dehydrogenase from Pseudomonas putida S12 date
authors Crabo, A.G., Gassner, G.T., Sazinsky, M.H.
compound source
symmetry
R_factor
R_Free 0.2583
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.83
Gene RPPX ; RPPX
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathway., Crabo AG, Singh B, Nguyen T, Emami S, Gassner GT, Sazinsky MH, Arch Biochem Biophys. 2017 Feb 15;616:47-58. doi: 10.1016/j.abb.2017.01.011. Epub, 2017 Jan 31. PMID:28153386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1085 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyj.pdb1.gz) 542 Kb
  • Biological Unit Coordinates (4qyj.pdb2.gz) 540 Kb
  • CSU: Contacts of Structural Units for 4QYJ
  • Structure Factors (1871 Kb)
  • Retrieve 4QYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYJ from S2C, [Save to disk]
  • Re-refined 4qyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QYJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyj_A] [4qyj] [4qyj_G] [4qyj_B] [4qyj_E] [4qyj_F] [4qyj_C] [4qyj_D] [4qyj_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QYJ
  • Community annotation for 4QYJ at PDBWiki (http://pdbwiki.org)

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