4QYL Crystal Structure of the human BRPF1 bromodomain in complex with a histone H2AK5ac peptide date
authors Lubula, M.Y., Glass, K.C.
compound source
symmetry
R_factor
R_Free 0.25257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand ALY, SO4 enzyme
Primary referenceStructural insights into recognition of acetylated histone ligands by the BRPF1 bromodomain., Lubula MY, Eckenroth BE, Carlson S, Poplawski A, Chruszcz M, Glass KC, FEBS Lett. 2014 Sep 30. pii: S0014-5793(14)00705-4. doi:, 10.1016/j.febslet.2014.09.028. PMID:25281266
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyl.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (4qyl.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (4qyl.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (4qyl.pdb4.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4QYL
  • CSU: Contacts of Structural Units for 4QYL
  • Structure Factors (970 Kb)
  • Retrieve 4QYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYL from S2C, [Save to disk]
  • Re-refined 4qyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QYL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QYL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyl_H] [4qyl_E] [4qyl_B] [4qyl_G] [4qyl_D] [4qyl_A] [4qyl_F] [4qyl_C] [4qyl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QYL: [BROMO ] by SMART
  • Other resources with information on 4QYL
  • Community annotation for 4QYL at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science